IL_6LQQ_008

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AAA*UGUUUAAUU

Length

12 nucleotides

Bulged bases

6LQQ|1|5A|G|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_008 not in the Motif Atlas

Geometric match to IL_8E0F_002

Geometric discrepancy: 0.1676

The information below is about IL_8E0F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6LQQ|1|5A|A|93
6LQQ|1|5A|A|94
6LQQ|1|5A|A|95
*
6LQQ|1|5A|U|149
6LQQ|1|5A|G|150
6LQQ|1|5A|U|151
6LQQ|1|5A|U|152
6LQQ|1|5A|U|153
6LQQ|1|5A|A|154
6LQQ|1|5A|A|155
6LQQ|1|5A|U|156
6LQQ|1|5A|U|157

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A5

U3 small nucleolar RNA-associated protein 5

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain AG

NET1-associated nuclear protein 1