IL_6LQQ_010
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 6LQQ|1|5A|U|239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_010 not in the Motif Atlas
- Geometric match to IL_6JDV_003
- Geometric discrepancy: 0.3962
- The information below is about IL_6JDV_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
6LQQ|1|5A|G|238
6LQQ|1|5A|U|239
6LQQ|1|5A|C|240
*
6LQQ|1|5A|G|273
6LQQ|1|5A|C|274
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 3A
- U3 small nucleolar RNA; U3 snoRNA
- Chain AF
- U3 small nucleolar RNA-associated protein 15
- Chain B8
- U3 small nucleolar RNA-associated protein 18
- Chain SG
- 40S ribosomal protein S5
- Chain SR
- 40S ribosomal protein S16-A
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