IL_6LQQ_012

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_012 not in the Motif Atlas

Geometric match to IL_4V9F_068

Geometric discrepancy: 0.279

The information below is about IL_4V9F_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6LQQ|1|5A|G|337
6LQQ|1|5A|A|338
6LQQ|1|5A|A|339
6LQQ|1|5A|U|340
*
6LQQ|1|5A|A|386
6LQQ|1|5A|C|387

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain 5F

U3 small nucleolar ribonucleoprotein protein IMP3

Chain RQ

U3 small nucleolar RNA-associated protein 14

Chain RV

Protein FAF1