IL_6LQQ_023

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

6LQQ|1|5A|U|525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_023 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2581

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6LQQ|1|5A|A|510
6LQQ|1|5A|G|511
*
6LQQ|1|5A|U|524
6LQQ|1|5A|U|525
6LQQ|1|5A|U|526

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 5I

Protein SOF1

Chain RQ

U3 small nucleolar RNA-associated protein 14