IL_6LQQ_027
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- 6LQQ|1|SA|A|61, 6LQQ|1|SA|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_027 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.5127
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6LQQ|1|SA|U|58
6LQQ|1|SA|C|59
6LQQ|1|SA|U|60
6LQQ|1|SA|A|61
6LQQ|1|SA|A|62
6LQQ|1|SA|G|63
*
6LQQ|1|SA|C|87
6LQQ|1|SA|U|88
6LQQ|1|SA|G|89
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SZ
- 40S ribosomal protein S24-A
Coloring options: