IL_6LQQ_033

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_033 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.1194

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6LQQ|1|SA|U|150
6LQQ|1|SA|G|151
6LQQ|1|SA|U|152
*
6LQQ|1|SA|A|162
6LQQ|1|SA|G|163
6LQQ|1|SA|A|164

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RA

Ribosome biogenesis protein ENP2

Chain RL

RNA cytidine acetyltransferase

Chain SH

40S ribosomal protein S6-A