IL_6LQQ_050

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAG*CAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|C|627
6LQQ|1|SA|G|628
6LQQ|1|SA|U|629
6LQQ|1|SA|A|630
6LQQ|1|SA|G|631
*
6LQQ|1|SA|C|969
6LQQ|1|SA|A|970
6LQQ|1|SA|A|971
6LQQ|1|SA|G|972

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RC

KRR1 small subunit processome component

Chain SO

40S ribosomal protein S13