IL_6LQQ_053

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCGGUCC*GAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|G|652
6LQQ|1|SA|C|653
6LQQ|1|SA|C|654
6LQQ|1|SA|G|655
6LQQ|1|SA|G|656
6LQQ|1|SA|U|657
6LQQ|1|SA|C|658
6LQQ|1|SA|C|659
*
6LQQ|1|SA|G|677
6LQQ|1|SA|A|678
6LQQ|1|SA|U|679
6LQQ|1|SA|U|680
6LQQ|1|SA|U|681
6LQQ|1|SA|C|682

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20