IL_6LQQ_069

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CACUG*CGUGCUGGCAACGAG

Length

20 nucleotides

Bulged bases

6LQQ|1|SA|U|1473, 6LQQ|1|SA|G|1536

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|C|1470
6LQQ|1|SA|A|1471
6LQQ|1|SA|C|1472
6LQQ|1|SA|U|1473
6LQQ|1|SA|G|1474
*
6LQQ|1|SA|C|1533
6LQQ|1|SA|G|1534
6LQQ|1|SA|U|1535
6LQQ|1|SA|G|1536
6LQQ|1|SA|C|1537
6LQQ|1|SA|U|1538
6LQQ|1|SA|G|1539
6LQQ|1|SA|G|1540
6LQQ|1|SA|C|1568
6LQQ|1|SA|A|1569
6LQQ|1|SA|A|1570
6LQQ|1|SA|C|1571
6LQQ|1|SA|G|1572
6LQQ|1|SA|A|1573
6LQQ|1|SA|G|1574

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain SG

40S ribosomal protein S5