IL_6LQQ_078

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_078 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3802

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6LQQ|1|SA|G|1696
6LQQ|1|SA|G|1697
6LQQ|1|SA|G|1698
6LQQ|1|SA|G|1699
*
6LQQ|1|SA|C|1703
6LQQ|1|SA|U|1704
6LQQ|1|SA|C|1705

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22