IL_6LQQ_082

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

6LQQ|1|SA|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_082 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1966

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6LQQ|1|SA|U|113
6LQQ|1|SA|C|114
6LQQ|1|SA|G|115
6LQQ|1|SA|U|116
6LQQ|1|SA|U|117
*
6LQQ|1|SA|A|299
6LQQ|1|SA|A|300
6LQQ|1|SA|A|301

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A