IL_6LQQ_087

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUUGAAU*AUUUAGAG

Length

17 nucleotides

Bulged bases

6LQQ|1|SA|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|C|1653
6LQQ|1|SA|G|1654
6LQQ|1|SA|A|1655
6LQQ|1|SA|U|1656
6LQQ|1|SA|U|1657
6LQQ|1|SA|G|1658
6LQQ|1|SA|A|1659
6LQQ|1|SA|A|1660
6LQQ|1|SA|U|1661
*
6LQQ|1|SA|A|1740
6LQQ|1|SA|U|1741
6LQQ|1|SA|U|1742
6LQQ|1|SA|U|1743
6LQQ|1|SA|A|1744
6LQQ|1|SA|G|1745
6LQQ|1|SA|A|1746
6LQQ|1|SA|G|1747

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12

Chain B3

U3 small nucleolar RNA-associated protein 13