IL_6LQQ_089

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUCAGGAUCUG*CGGAGAAUUUG

Length

22 nucleotides

Bulged bases

6LQQ|1|SA|A|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|C|1675
6LQQ|1|SA|U|1676
6LQQ|1|SA|C|1677
6LQQ|1|SA|A|1678
6LQQ|1|SA|G|1679
6LQQ|1|SA|G|1680
6LQQ|1|SA|A|1681
6LQQ|1|SA|U|1682
6LQQ|1|SA|C|1683
6LQQ|1|SA|U|1684
6LQQ|1|SA|G|1685
*
6LQQ|1|SA|C|1716
6LQQ|1|SA|G|1717
6LQQ|1|SA|G|1718
6LQQ|1|SA|A|1719
6LQQ|1|SA|G|1720
6LQQ|1|SA|A|1721
6LQQ|1|SA|A|1722
6LQQ|1|SA|U|1723
6LQQ|1|SA|U|1724
6LQQ|1|SA|U|1725
6LQQ|1|SA|G|1726

Current chains

Chain SA

18S pre-rRNA

Nearby chains