IL_6LQR_041

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

GCCGGUCC*GAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQR|1|SA|G|652
6LQR|1|SA|C|653
6LQR|1|SA|C|654
6LQR|1|SA|G|655
6LQR|1|SA|G|656
6LQR|1|SA|U|657
6LQR|1|SA|C|658
6LQR|1|SA|C|659
*
6LQR|1|SA|G|677
6LQR|1|SA|A|678
6LQR|1|SA|U|679
6LQR|1|SA|U|680
6LQR|1|SA|U|681
6LQR|1|SA|C|682

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20