IL_6LQS_002

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUC*GAAACU

Length

10 nucleotides

Bulged bases

6LQS|1|5A|C|469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|3A|A|48
6LQS|1|3A|C|49
6LQS|1|3A|U|50
6LQS|1|3A|C|51
*
6LQS|1|5A|G|465
6LQS|1|5A|A|466
6LQS|1|5A|A|467
6LQS|1|5A|A|468
6LQS|1|5A|C|469
6LQS|1|5A|U|470

Current chains

Chain 3A

U3 snoRNA

Chain 5A

5' ETS

Nearby chains

Chain 3E

Nucleolar protein 58

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain 5K

rRNA-processing protein FCF1

Chain AE

U3 small nucleolar RNA-associated protein 10