IL_6LQS_005

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACCC*GGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|3A|G|101
6LQS|1|3A|U|102
6LQS|1|3A|A|103
6LQS|1|3A|C|104
6LQS|1|3A|C|105
6LQS|1|3A|C|106
*
6LQS|1|3A|G|310
6LQS|1|3A|G|311
6LQS|1|3A|U|312
6LQS|1|3A|A|313
6LQS|1|3A|C|314

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 3D

Nucleolar protein 56

Chain 5J

rRNA-processing protein FCF2