IL_6LQS_007

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCUU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|3A|A|138
6LQS|1|3A|G|139
6LQS|1|3A|C|140
6LQS|1|3A|U|141
6LQS|1|3A|U|142
*
6LQS|1|3A|A|169
6LQS|1|3A|C|171
6LQS|1|3A|U|172
6LQS|1|3A|A|173
6LQS|1|3A|U|174

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9

Chain AE

U3 small nucleolar RNA-associated protein 10

Chain RW

Regulator of rDNA transcription protein 14