IL_6LQS_013

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_013 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.1764

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6LQS|1|SA|C|50
6LQS|1|SA|A|51
6LQS|1|SA|U|52
*
6LQS|1|SA|A|428
6LQS|1|SA|G|429

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SZ

40S ribosomal protein S24-A