IL_6LQS_018

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_018 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2019

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6LQS|1|SA|U|117
6LQS|1|SA|U|118
6LQS|1|SA|A|119
6LQS|1|SA|U|120
6LQS|1|SA|U|121
6LQS|1|SA|U|122
*
6LQS|1|SA|A|295
6LQS|1|SA|U|296
6LQS|1|SA|U|297
6LQS|1|SA|C|298
6LQS|1|SA|A|299

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A