IL_6LQS_022
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 6LQS|1|SA|U|260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQS_022 not in the Motif Atlas
- Geometric match to IL_7RQB_022
- Geometric discrepancy: 0.3307
- The information below is about IL_7RQB_022
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_05564.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
6LQS|1|SA|G|204
6LQS|1|SA|U|205
6LQS|1|SA|A|206
*
6LQS|1|SA|U|259
6LQS|1|SA|U|260
6LQS|1|SA|U|261
6LQS|1|SA|U|262
6LQS|1|SA|C|263
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SF
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S6-A
- Chain SJ
- 40S ribosomal protein S8-A
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