IL_6LQS_028

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_028 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4425

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6LQS|1|SA|U|318
6LQS|1|SA|U|319
6LQS|1|SA|U|320
6LQS|1|SA|C|321
6LQS|1|SA|G|322
6LQS|1|SA|A|323
*
6LQS|1|SA|U|345
6LQS|1|SA|G|346

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SM

40S ribosomal protein S11-A