IL_6LQS_035

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_035 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1784

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6LQS|1|SA|A|518
6LQS|1|SA|C|519
6LQS|1|SA|A|520
*
6LQS|1|SA|U|532
6LQS|1|SA|U|533

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SZ

40S ribosomal protein S24-A