IL_6LQS_059

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUG*CGUGCUGACGAG

Length

17 nucleotides

Bulged bases

6LQS|1|SA|U|1473

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|C|1470
6LQS|1|SA|A|1471
6LQS|1|SA|C|1472
6LQS|1|SA|U|1473
6LQS|1|SA|G|1474
*
6LQS|1|SA|C|1533
6LQS|1|SA|G|1534
6LQS|1|SA|U|1535
6LQS|1|SA|G|1536
6LQS|1|SA|C|1537
6LQS|1|SA|U|1538
6LQS|1|SA|G|1539
6LQS|1|SA|A|1570
6LQS|1|SA|C|1571
6LQS|1|SA|G|1572
6LQS|1|SA|A|1573
6LQS|1|SA|G|1574

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain SG

40S ribosomal protein S5