IL_6LQS_071

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUGG*CUAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|U|150
6LQS|1|SA|G|151
6LQS|1|SA|U|152
6LQS|1|SA|G|153
6LQS|1|SA|G|154
*
6LQS|1|SA|C|160
6LQS|1|SA|U|161
6LQS|1|SA|A|162
6LQS|1|SA|G|163
6LQS|1|SA|A|164

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SH

40S ribosomal protein S6-A

Chain SZ

40S ribosomal protein S24-A