IL_6LQS_073

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGGUC*GAUUUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|G|652
6LQS|1|SA|C|653
6LQS|1|SA|C|654
6LQS|1|SA|G|655
6LQS|1|SA|G|656
6LQS|1|SA|U|657
6LQS|1|SA|C|658
*
6LQS|1|SA|G|677
6LQS|1|SA|A|678
6LQS|1|SA|U|679
6LQS|1|SA|U|680
6LQS|1|SA|U|681
6LQS|1|SA|C|682

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20