Loop IL_6LQS

3D structure

PDB id: 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GAAAAAAUUAGAGUGUUCAAAGCAGG*CUCGAAUAUAUUAGC
Length: 41 nucleotides
Bulged bases: 6LQS|1|SA|G|765, 6LQS|1|SA|A|789, 6LQS|1|SA|U|794, 6LQS|1|SA|U|795
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6LQS|1|SA|G|751
6LQS|1|SA|A|752
6LQS|1|SA|A|753
6LQS|1|SA|A|754
6LQS|1|SA|A|755
6LQS|1|SA|A|756
6LQS|1|SA|A|757
6LQS|1|SA|U|758
6LQS|1|SA|U|759
6LQS|1|SA|A|760
6LQS|1|SA|G|761
6LQS|1|SA|A|762
6LQS|1|SA|G|763
6LQS|1|SA|U|764
6LQS|1|SA|G|765
6LQS|1|SA|U|766
6LQS|1|SA|U|767
6LQS|1|SA|C|768
6LQS|1|SA|A|769
6LQS|1|SA|A|770
6LQS|1|SA|A|771
6LQS|1|SA|G|772
6LQS|1|SA|C|773
6LQS|1|SA|A|774
6LQS|1|SA|G|775
6LQS|1|SA|G|776
*
6LQS|1|SA|C|784
6LQS|1|SA|U|785
6LQS|1|SA|C|786
6LQS|1|SA|G|787
6LQS|1|SA|A|788
6LQS|1|SA|A|789
6LQS|1|SA|U|790
6LQS|1|SA|A|791
6LQS|1|SA|U|792
6LQS|1|SA|A|793
6LQS|1|SA|U|794
6LQS|1|SA|U|795
6LQS|1|SA|A|796
6LQS|1|SA|G|797
6LQS|1|SA|C|798

Current chains

Chain SA: 18S pre-rRNA

Nearby chains

Chain 3F: Ribosomal RNA-processing protein 9
Chain SF: 40S ribosomal protein S4-A
Chain SK: 40S ribosomal protein S9-A
Chain SM: 40S ribosomal protein S11-A
Chain SZ: 40S ribosomal protein S24-A

IL_6LQS_075