IL_6LQS_079

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCAGGAUCUGCU*AGCGGAGAAUUUG

Length

26 nucleotides

Bulged bases

6LQS|1|SA|U|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|C|1675
6LQS|1|SA|U|1676
6LQS|1|SA|C|1677
6LQS|1|SA|A|1678
6LQS|1|SA|G|1679
6LQS|1|SA|G|1680
6LQS|1|SA|A|1681
6LQS|1|SA|U|1682
6LQS|1|SA|C|1683
6LQS|1|SA|U|1684
6LQS|1|SA|G|1685
6LQS|1|SA|C|1686
6LQS|1|SA|U|1687
*
6LQS|1|SA|A|1714
6LQS|1|SA|G|1715
6LQS|1|SA|C|1716
6LQS|1|SA|G|1717
6LQS|1|SA|G|1718
6LQS|1|SA|A|1719
6LQS|1|SA|G|1720
6LQS|1|SA|A|1721
6LQS|1|SA|A|1722
6LQS|1|SA|U|1723
6LQS|1|SA|U|1724
6LQS|1|SA|U|1725
6LQS|1|SA|G|1726

Current chains

Chain SA

18S pre-rRNA

Nearby chains