IL_6LQT_029

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6LQT|1|SA|U|440

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQT_029 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.2101

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6LQT|1|SA|U|439
6LQT|1|SA|U|440
6LQT|1|SA|A|441
*
6LQT|1|SA|U|463
6LQT|1|SA|A|464

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A