IL_6LQT_037
3D structure
- PDB id
- 6LQT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GGCAAGUC*GCAGCCGCGGUAAUUCC
- Length
- 25 nucleotides
- Bulged bases
- 6LQT|1|SA|A|556, 6LQT|1|SA|C|572, 6LQT|1|SA|C|573, 6LQT|1|SA|A|579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQT|1|SA|G|552
6LQT|1|SA|G|553
6LQT|1|SA|C|554
6LQT|1|SA|A|555
6LQT|1|SA|A|556
6LQT|1|SA|G|557
6LQT|1|SA|U|558
6LQT|1|SA|C|559
*
6LQT|1|SA|G|568
6LQT|1|SA|C|569
6LQT|1|SA|A|570
6LQT|1|SA|G|571
6LQT|1|SA|C|572
6LQT|1|SA|C|573
6LQT|1|SA|G|574
6LQT|1|SA|C|575
6LQT|1|SA|G|576
6LQT|1|SA|G|577
6LQT|1|SA|U|578
6LQT|1|SA|A|579
6LQT|1|SA|A|580
6LQT|1|SA|U|581
6LQT|1|SA|U|582
6LQT|1|SA|C|583
6LQT|1|SA|C|584
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain 5H
- Something about silencing protein 10
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
- Chain SY
- 40S ribosomal protein S23-A
Coloring options: