IL_6LQT_056

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CACUG*CGUGCUGACGAG

Length

17 nucleotides

Bulged bases

6LQT|1|SA|U|1473

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQT|1|SA|C|1470
6LQT|1|SA|A|1471
6LQT|1|SA|C|1472
6LQT|1|SA|U|1473
6LQT|1|SA|G|1474
*
6LQT|1|SA|C|1533
6LQT|1|SA|G|1534
6LQT|1|SA|U|1535
6LQT|1|SA|G|1536
6LQT|1|SA|C|1537
6LQT|1|SA|U|1538
6LQT|1|SA|G|1539
6LQT|1|SA|A|1570
6LQT|1|SA|C|1571
6LQT|1|SA|G|1572
6LQT|1|SA|A|1573
6LQT|1|SA|G|1574

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain SG

40S ribosomal protein S5