IL_6LQT_067

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGUG*CAUUU

Length

9 nucleotides

Bulged bases

6LQT|1|5A|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQT|1|5A|A|497
6LQT|1|5A|G|498
6LQT|1|5A|U|499
6LQT|1|5A|G|500
*
6LQT|1|5A|C|538
6LQT|1|5A|A|539
6LQT|1|5A|U|540
6LQT|1|5A|U|541
6LQT|1|5A|U|542

Current chains

Chain 5A

5' ETS

Nearby chains

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain RQ

U3 small nucleolar RNA-associated protein 14