Loop IL_6LQT

3D structure

PDB id: 6LQT (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å

Loop

Sequence: GAAAAAAUUAGAGUGUUCAAAGCAGG*CUCGAAUAUAUUAGC
Length: 41 nucleotides
Bulged bases: 6LQT|1|SA|G|765, 6LQT|1|SA|A|789, 6LQT|1|SA|U|794, 6LQT|1|SA|U|795
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6LQT|1|SA|G|751
6LQT|1|SA|A|752
6LQT|1|SA|A|753
6LQT|1|SA|A|754
6LQT|1|SA|A|755
6LQT|1|SA|A|756
6LQT|1|SA|A|757
6LQT|1|SA|U|758
6LQT|1|SA|U|759
6LQT|1|SA|A|760
6LQT|1|SA|G|761
6LQT|1|SA|A|762
6LQT|1|SA|G|763
6LQT|1|SA|U|764
6LQT|1|SA|G|765
6LQT|1|SA|U|766
6LQT|1|SA|U|767
6LQT|1|SA|C|768
6LQT|1|SA|A|769
6LQT|1|SA|A|770
6LQT|1|SA|A|771
6LQT|1|SA|G|772
6LQT|1|SA|C|773
6LQT|1|SA|A|774
6LQT|1|SA|G|775
6LQT|1|SA|G|776
*
6LQT|1|SA|C|784
6LQT|1|SA|U|785
6LQT|1|SA|C|786
6LQT|1|SA|G|787
6LQT|1|SA|A|788
6LQT|1|SA|A|789
6LQT|1|SA|U|790
6LQT|1|SA|A|791
6LQT|1|SA|U|792
6LQT|1|SA|A|793
6LQT|1|SA|U|794
6LQT|1|SA|U|795
6LQT|1|SA|A|796
6LQT|1|SA|G|797
6LQT|1|SA|C|798

Current chains

Chain SA: 18S pre-rRNA

Nearby chains

Chain 3F: Ribosomal RNA-processing protein 9
Chain SF: 40S ribosomal protein S4-A
Chain SK: 40S ribosomal protein S9-A
Chain SM: 40S ribosomal protein S11-A
Chain SZ: 40S ribosomal protein S24-A

IL_6LQT_072