IL_6LQT_076

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUCAGGAUCUGCU*AGCGGAGAAUUUG

Length

26 nucleotides

Bulged bases

6LQT|1|SA|U|1724

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQT|1|SA|C|1675
6LQT|1|SA|U|1676
6LQT|1|SA|C|1677
6LQT|1|SA|A|1678
6LQT|1|SA|G|1679
6LQT|1|SA|G|1680
6LQT|1|SA|A|1681
6LQT|1|SA|U|1682
6LQT|1|SA|C|1683
6LQT|1|SA|U|1684
6LQT|1|SA|G|1685
6LQT|1|SA|C|1686
6LQT|1|SA|U|1687
*
6LQT|1|SA|A|1714
6LQT|1|SA|G|1715
6LQT|1|SA|C|1716
6LQT|1|SA|G|1717
6LQT|1|SA|G|1718
6LQT|1|SA|A|1719
6LQT|1|SA|G|1720
6LQT|1|SA|A|1721
6LQT|1|SA|A|1722
6LQT|1|SA|U|1723
6LQT|1|SA|U|1724
6LQT|1|SA|U|1725
6LQT|1|SA|G|1726

Current chains

Chain SA

18S pre-rRNA

Nearby chains