IL_6LQU_020

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UAA

Length

5 nucleotides

Bulged bases

6LQU|1|5A|A|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_020 not in the Motif Atlas

Geometric match to IL_1JZV_002

Geometric discrepancy: 0.3183

The information below is about IL_1JZV_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6LQU|1|5A|U|340
6LQU|1|5A|G|341
*
6LQU|1|5A|U|384
6LQU|1|5A|A|385
6LQU|1|5A|A|386

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain RQ

U3 small nucleolar RNA-associated protein 14

Chain RV

Protein FAF1