IL_6LQU_067

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_067 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.2819

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6LQU|1|SA|G|985
6LQU|1|SA|G|986
6LQU|1|SA|G|987
6LQU|1|SA|A|988
6LQU|1|SA|U|989
6LQU|1|SA|C|990
*
6LQU|1|SA|G|1014
6LQU|1|SA|U|1015
6LQU|1|SA|C|1016

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5