IL_6LQV_006

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAAAUUG*CGC

Length

10 nucleotides

Bulged bases

6LQV|1|3A|U|197, 6LQV|1|3A|U|198

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQV|1|3A|G|115
6LQV|1|3A|A|116
6LQV|1|3A|A|117
6LQV|1|3A|A|118
6LQV|1|3A|U|197
6LQV|1|3A|U|198
6LQV|1|3A|G|199
*
6LQV|1|3A|C|250
6LQV|1|3A|G|251
6LQV|1|3A|C|252

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 3F

Ribosomal RNA-processing protein 9

Chain 3H

13 kDa ribonucleoprotein-associated protein