IL_6LQV_042

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAUUGAA*UUUAGAG

Length

15 nucleotides

Bulged bases

6LQV|1|SA|U|1657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQV|1|SA|C|1653
6LQV|1|SA|G|1654
6LQV|1|SA|A|1655
6LQV|1|SA|U|1656
6LQV|1|SA|U|1657
6LQV|1|SA|G|1658
6LQV|1|SA|A|1659
6LQV|1|SA|A|1660
*
6LQV|1|SA|U|1741
6LQV|1|SA|U|1742
6LQV|1|SA|U|1743
6LQV|1|SA|A|1744
6LQV|1|SA|G|1745
6LQV|1|SA|A|1746
6LQV|1|SA|G|1747

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12

Chain B3

U3 small nucleolar RNA-associated protein 13