IL_6LSR_010

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6LSR|1|2|C|185, 6LSR|1|2|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|180
6LSR|1|2|C|181
6LSR|1|2|G|182
6LSR|1|2|C|183
6LSR|1|2|U|184
6LSR|1|2|C|185
6LSR|1|2|G|186
6LSR|1|2|U|187
6LSR|1|2|G|188
6LSR|1|2|G|189
*
6LSR|1|2|C|252
6LSR|1|2|G|253
6LSR|1|2|G|254
6LSR|1|2|C|255
6LSR|1|2|G|256

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13