IL_6LSR_016

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUGAAAC*GGGAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|415
6LSR|1|2|U|416
6LSR|1|2|G|417
6LSR|1|2|A|418
6LSR|1|2|A|419
6LSR|1|2|A|420
6LSR|1|2|C|421
*
6LSR|1|8|G|13
6LSR|1|8|G|15
6LSR|1|8|G|16
6LSR|1|8|A|17
6LSR|1|8|U|18
6LSR|1|8|C|19

Current chains

Chain 2

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain D

60S ribosomal protein L4

Chain Y

60S ribosomal protein L17

Chain t

60S ribosomal protein L32