IL_6LSR_018

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6LSR|1|2|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_018 not in the Motif Atlas

Geometric match to IL_5ED2_004

Geometric discrepancy: 0.1937

The information below is about IL_5ED2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6LSR|1|2|G|448
6LSR|1|2|C|449
6LSR|1|2|G|450
6LSR|1|2|C|451
*
6LSR|1|2|G|1296
6LSR|1|2|U|1297
6LSR|1|2|C|1298

Current chains

Chain 2

28S rRNA

Nearby chains

Chain t

60S ribosomal protein L32

Chain u

60S ribosomal protein L35a

Chain v

60S ribosomal protein L6