IL_6LSR_086

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

6LSR|1|2|G|2546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_086 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2161

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6LSR|1|2|G|2542
6LSR|1|2|A|2543
6LSR|1|2|G|2544
6LSR|1|2|U|2545
6LSR|1|2|G|2546
6LSR|1|2|G|2547
*
6LSR|1|2|C|2772
6LSR|1|2|OMG|2773
6LSR|1|2|C|2774

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain O

60S ribosomal protein L38