IL_6LSR_092

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

6LSR|1|2|G|2652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_092 not in the Motif Atlas

Geometric match to IL_3SUX_001

Geometric discrepancy: 0.3403

The information below is about IL_3SUX_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6LSR|1|2|C|2651
6LSR|1|2|G|2652
6LSR|1|2|C|2653
*
6LSR|1|2|G|2681
6LSR|1|2|G|2682

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain X

60S ribosomal protein L37a