IL_6LSR_106

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6LSR|1|2|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_106 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2992

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

6LSR|1|2|G|3710
6LSR|1|2|A|3711
6LSR|1|2|A|3712
6LSR|1|2|U|3713
6LSR|1|2|G|3714
*
6LSR|1|2|C|3739
6LSR|1|2|G|3740
6LSR|1|2|C|3741

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain A

60S ribosomal protein L10a

Chain m

60S ribosomal protein L8