IL_6LSR_116
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 6LSR|1|2|G|4183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSR_116 not in the Motif Atlas
- Homologous match to IL_5TBW_095
- Geometric discrepancy: 0.1063
- The information below is about IL_5TBW_095
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
6LSR|1|2|U|3927
6LSR|1|2|A|3928
6LSR|1|2|G|3929
*
6LSR|1|2|U|4181
6LSR|1|2|G|4182
6LSR|1|2|G|4183
6LSR|1|2|G|4184
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 60S ribosomal export protein NMD3
- Chain U
- 60S ribosomal protein L15
- Chain W
- 60S ribosomal protein L36a
- Chain m
- 60S ribosomal protein L8
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