IL_6LSR_133
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CCAU*AGGCG
- Length
- 9 nucleotides
- Bulged bases
- 6LSR|1|2|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSR_133 not in the Motif Atlas
- Geometric match to IL_5J7L_256
- Geometric discrepancy: 0.3406
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6LSR|1|2|C|4582
6LSR|1|2|C|4583
6LSR|1|2|A|4584
6LSR|1|2|U|4585
*
6LSR|1|2|A|4717
6LSR|1|2|G|4718
6LSR|1|2|G|4719
6LSR|1|2|C|4720
6LSR|1|2|G|4721
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L13a
Coloring options: