IL_6LSR_144

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

6LSR|1|2|C|4757, 6LSR|1|2|U|4758, 6LSR|1|2|A|4764, 6LSR|1|2|C|4871, 6LSR|1|2|G|4873, 6LSR|1|2|A|4874, 6LSR|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|4756
6LSR|1|2|C|4757
6LSR|1|2|U|4758
6LSR|1|2|C|4759
6LSR|1|2|G|4760
6LSR|1|2|G|4761
6LSR|1|2|A|4762
6LSR|1|2|U|4763
6LSR|1|2|A|4764
6LSR|1|2|G|4765
*
6LSR|1|2|U|4869
6LSR|1|2|OMG|4870
6LSR|1|2|C|4871
6LSR|1|2|2MG|4872
6LSR|1|2|G|4873
6LSR|1|2|A|4874
6LSR|1|2|G|4875
6LSR|1|2|U|4876
6LSR|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain v

60S ribosomal protein L6