IL_6LSR_166

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUGUCGGCGGCCCGG*UCCCCCGACC

Length

25 nucleotides

Bulged bases

6LSR|1|2|C|501, 6LSR|1|2|C|502, 6LSR|1|2|C|503, 6LSR|1|2|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|491
6LSR|1|2|U|492
6LSR|1|2|G|493
6LSR|1|2|U|494
6LSR|1|2|C|495
6LSR|1|2|G|496
6LSR|1|2|G|497
6LSR|1|2|C|498
6LSR|1|2|G|499
6LSR|1|2|G|500
6LSR|1|2|C|501
6LSR|1|2|C|502
6LSR|1|2|C|503
6LSR|1|2|G|504
6LSR|1|2|G|505
*
6LSR|1|2|U|653
6LSR|1|2|C|654
6LSR|1|2|C|655
6LSR|1|2|C|656
6LSR|1|2|C|657
6LSR|1|2|C|658
6LSR|1|2|G|659
6LSR|1|2|A|660
6LSR|1|2|C|661
6LSR|1|2|C|662

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Z

60S ribosomal protein L18