IL_6LSR_179

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)*CGAC

Length

43 nucleotides

Bulged bases

6LSR|1|2|G|4104, 6LSR|1|2|A|4105, 6LSR|1|2|U|4113, 6LSR|1|2|G|4115, 6LSR|1|2|C|4116, 6LSR|1|2|U|4117, 6LSR|1|2|U|4118, 6LSR|1|2|C|4119, 6LSR|1|2|U|4120, 6LSR|1|2|G|4121

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|4091
6LSR|1|2|G|4092
6LSR|1|2|G|4093
6LSR|1|2|G|4094
6LSR|1|2|G|4095
6LSR|1|2|C|4096
6LSR|1|2|G|4097
6LSR|1|2|A|4098
6LSR|1|2|G|4099
6LSR|1|2|C|4100
6LSR|1|2|C|4101
6LSR|1|2|C|4102
6LSR|1|2|C|4103
6LSR|1|2|G|4104
6LSR|1|2|A|4105
6LSR|1|2|G|4106
6LSR|1|2|G|4107
6LSR|1|2|G|4108
6LSR|1|2|G|4109
6LSR|1|2|C|4110
6LSR|1|2|U|4111
6LSR|1|2|C|4112
6LSR|1|2|U|4113
6LSR|1|2|C|4114
6LSR|1|2|G|4115
6LSR|1|2|C|4116
6LSR|1|2|U|4117
6LSR|1|2|U|4118
6LSR|1|2|C|4119
6LSR|1|2|U|4120
6LSR|1|2|G|4121
6LSR|1|2|G|4122
6LSR|1|2|C|4123
6LSR|1|2|G|4124
6LSR|1|2|C|4125
6LSR|1|2|C|4126
6LSR|1|2|A|4127
6LSR|1|2|A|4128
6LSR|1|2|B8W|4129
*
6LSR|1|2|C|4155
6LSR|1|2|G|4156
6LSR|1|2|A|4157
6LSR|1|2|C|4158

Current chains

Chain 2

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L30

Chain F

60S ribosomal protein L34

Chain G

60S ribosomal protein L7a

Chain X

60S ribosomal protein L37a

Chain i

60S ribosomal protein L27

Chain m

60S ribosomal protein L8