IL_6LSS_040

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

6LSS|1|2|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_040 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3455

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6LSS|1|2|C|1093
6LSS|1|2|G|1094
6LSS|1|2|A|1095
6LSS|1|2|C|1096
*
6LSS|1|2|G|1199
6LSS|1|2|G|1200
6LSS|1|2|U|1201
6LSS|1|2|C|1202
6LSS|1|2|G|1203

Current chains

Chain 2

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L18a

Chain c

60S ribosomal protein L21