IL_6LSS_079
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6LSS|1|2|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_079 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1579
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6LSS|1|2|C|2302
6LSS|1|2|C|2303
6LSS|1|2|U|2304
6LSS|1|2|U|2305
6LSS|1|2|G|2306
6LSS|1|2|A|2307
6LSS|1|2|A|2308
6LSS|1|2|G|2309
*
6LSS|1|2|U|2329
6LSS|1|2|G|2330
6LSS|1|2|G|2331
6LSS|1|2|A|2332
6LSS|1|2|G|2333
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L17
- Chain h
- 60S ribosomal protein L26
- Chain k
- 60S ribosomal protein L32
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